YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33147939, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKELSFAIG LEPTQAIEYL KQKKMLAEKV LKKELHESAL ARATTIARLT SLEMTKDIYA  60
   61 SMETARREGK SFNTWKKGLV DEMERKGWVA GRDKKLGRGL DGTLLADPKT GEYFGTPRRL 120
  121 NTIYRVNMQA AYSGARYQRM MDNVDNRPYW KYSAVSDSRT RPAHLALNGR VYRYDAPFWA 180
  181 TFYPPNGFNC RCTVIALNAR DLARQDLTVG DSSDFLVETQ RLADKFDNTE KTIGFKLPNG 240
  241 TVRVTDKGFD YNVGRLTYRP NLDLYPDKLA HQFAKVEMTG GEFEFTYQKI EKQITQIKQA 300
  301 LGVDKKLSVE QMVKVRDSLT RNFKFAAGVL SAENKALMQS KTATVWLSDD TLIKQINSRD 360
  361 GQEFGISEYA KLPDVLRDAE HILQTNRTYE FYKQIDGNHY LVIIKVLQAE NEIFVQSFRL 420
  421 VGEKEWLKML KKKAAR

Type	Start	End	Confidence
Signal Peptide	1	16	0.54
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	436	0.99