YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33151586, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.59
Transmembrane Helix	5	22	0.63
Cytoplasmic	23	52	0.92
Transmembrane Helix	53	74	0.88
Non-Cytoplasmic	75	79	0.71
Transmembrane Helix	80	104	0.82
Cytoplasmic	105	124	0.91
Transmembrane Helix	125	147	0.90
Non-Cytoplasmic	148	189	0.94
Transmembrane Helix	190	210	0.91
Cytoplasmic	211	218	0.82
Transmembrane Helix	219	242	0.88
Non-Cytoplasmic	243	276	0.97
Transmembrane Helix	277	298	0.90
Cytoplasmic	299	314	0.92
Transmembrane Helix	315	338	0.91
Non-Cytoplasmic	339	363	0.96
Transmembrane Helix	364	386	0.90
Cytoplasmic	387	407	0.91
Transmembrane Helix	408	428	0.89
Non-Cytoplasmic	429	436	0.72
Transmembrane Helix	437	457	0.90
Cytoplasmic	458	463	0.80
Transmembrane Helix	464	483	0.94
Non-Cytoplasmic	484	493	0.76
Transmembrane Helix	494	514	0.91
Cytoplasmic	515	528	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFFFCVAM LLVGYFIYGK VVERIFTINP QKMTPAHAMS DGVDYMPMSK TKIWLIQLLN  60
   61 IAGTGPIFGP ILGALYGPVA MLWIVLGCIF AGAVHDYFSG MLSVRNGGAT MPVLAGKYLG 120
  121 RPVKVFINIM ALLLLLLVGV VFVASPAQLM ATITMDVLGG TSGALQLNDA ETVHQSLQTT 180
  181 GLTVWGMDKA TIISVWTLII FCYYILATLL PVDKIIGRIY PLFGALLLFM SIGMVYGLVS 240
  241 AHFSAQDPID FFRTINADGQ GLTWEKFTQN FQVKGDVPIW PLLFLTISCG ALSGFHATQS 300
  301 PLMARCANNE SDGRFIFYGA MITEGLIALV WCTVGLSFYE NPQMLQDAIS AGSPSKVVYD 360
  361 SSLHFLGFIG GIFAVLGVVV LPITSGDTAF RAARLQLAEI FKIEQRSLTK RLMIAIPLFT 420
  421 LGFIVSKIDF SVLWRYFTWA NQTTAMIMLW TAAAYLYRYK KFHWVCSIPA WFITTVCSTY 480
  481 LFYNKIGFGL DYQLSVYLGF ATTIICIVMF FKLLKPLSDN DETTPVEN