YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33151580, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEYVPFQTP NLVWDSTIAI YLFLLGISSG AVQLAIAFRN SVKIEKPSEN WVIRSAAILG  60
   61 TVPTLIGLTL LVFHLTKPWS FWKLMFNYSS TSVMSMGVML FQLYIAMLTI WIAIMFKGTV 120
  121 AVLINRYLPI FKFLLCWLDV AEKRLLKIIE FILFIFAAVL GAYTGFLLSA LVSYPMLNNP 180
  181 VLPPLFLASG VSSGIAATFL MILLVGKLSG ESQEVHFMHK FEVPIMVTEL GLIIAFFVGL 240
  241 HFGGGDKTLA LQNALSGFWG MVFWIGVISI GILIPLVANL FAHYKLKHNV KFIVLVSVLD 300
  301 LIGVLCLRYF ILYASQLTVV S

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.93
Transmembrane Helix	17	38	0.93
Cytoplasmic	39	50	0.89
Transmembrane Helix	51	75	0.87
Non-Cytoplasmic	76	99	0.80
Transmembrane Helix	100	124	0.77
Cytoplasmic	125	150	0.88
Transmembrane Helix	151	172	0.91
Non-Cytoplasmic	173	184	0.80
Transmembrane Helix	185	205	0.95
Cytoplasmic	206	222	0.87
Transmembrane Helix	223	244	0.90
Non-Cytoplasmic	245	259	0.89
Transmembrane Helix	260	282	0.91
Cytoplasmic	283	291	0.85
Transmembrane Helix	292	312	0.96
Non-Cytoplasmic	313	321	0.91