YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23465589, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVFSCDMS KSSRTGKPGK TGKAQVRKKG SAGPIAFFVS LFIIALGTIQ LVSTFHTYAL  60
   61 NLAELNGLKR EEASLIAQKQ ELENDIKRWD DKAYITAQAR ERLGFVFPGE QAVRVLHPEA 120
  121 VTGSDSESQK TEDSSSSNKK VLPWYSELSY SLKKADEPVT DSVSGKSDIS GSSDSSSNDS 180
  181 SKRSDKSDQN TQSDQNTQQN TQQNTGEGTQ Q

Type	Start	End	Confidence
Cytoplasmic	1	31	0.82
Transmembrane Helix	32	52	0.78
Non-Cytoplasmic	53	211	0.94