YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOKA_DANRE
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMLRRSSVF AAEVMEVFDR SPTDKELVSQ SKVLCRDYIH SRLHRAGIGW SKPEHGSGGT  60
   61 LAEVSSVLLW LGDELEYLRP NVYRNVARQL NITIASENIV SDAFLAVAAE IFSTEYSRKG 120
  121 LEKHKGVTWG KIVSLYAVAG ALAVDCVRNG HPAMVHTIVD CMGEFVRKSL ASWLKKRGGW 180
  181 ADITKCVVST DPSFHSHWLV TAACACGHYL KAVVFYLLRE K

Type	Start	End	Confidence
Non-Cytoplasmic	1	197	0.65
Transmembrane Helix	198	218	0.53
Cytoplasmic	219	221	0.52