YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33636599
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRRAQSLP AHMLEPAKPQ RGRCVAAICF SWKVLTCIVS HVLLVLLVVS YCVGGAYLFQ  60
   61 HLERPHELEV KRDIQNLRVN LTENIWLLSD DAVVLRESDW MANASKHLAN FEKQILTAIK 120
  121 ADGWDGDEDL RKSQWTFAGS LFYSIIVITT IGYGHISPRT DWGKVTTIFY AIVGIPLMLI 180
  181 CLSNIGDVMA TSFRFLYWRI CCYVCTRTAK RPRNARSRQR SMRSQRHARS QPPPSFRRSM 240
  241 KMTQRSGNDS GLGPSMGHAY SDPDLRTMGR GYDDREFGHR SSGGGRNRRQ QQQQHLHHDP 300
  301 RQRHTIYGDG YETQTLNRSN RYSSRQRQRD RMRDRHTVER ERYSRSHLDA GSIEDFGDMQ 360
  361 PPAKRAASVR SVRSPHNQES SKASRELHRL HSAPGRSRAK SVDPRHVSSH YEDVDEDVVR 420
  421 KTPIIPNRYA LDDFGGNRRQ AAPRSQSMPR SAHQRQRQKD RERERSPQPP PQSSYRQQHD 480
  481 RRAGSLGRQS SRYGNHLELP DYDAPPPGRD HRRDRRGHSQ GRYEDYVEES FDEGSLYGDN 540
  541 NYEDYPPERH HSRSREPKRN RRRERAERLP PSPRIMSPMG FPVQRQIRRR PSYDYDDDDS 600
  601 MYGDEYGDYG DLLPKDRPVP IWLCVFLVVS YILGGAVLFA YWENWSFLDS AYFCFITLTT 660
  661 IGFGDFVPAK GVKDESEQSI AYCSLYLLFG IALLAMSFNL VQEEFIANVK EVARRLGILK 720
  721 DDDDEQDED

Type	Start	End	Confidence
Cytoplasmic	1	20	0.59
Transmembrane Helix	21	35	0.34
Non-Cytoplasmic	36	36	0.39
Transmembrane Helix	37	59	0.77
Cytoplasmic	60	134	0.67
Transmembrane Helix	135	157	0.87
Non-Cytoplasmic	158	165	0.63
Transmembrane Helix	166	189	0.87
Cytoplasmic	190	620	0.94
Transmembrane Helix	621	642	0.93
Non-Cytoplasmic	643	647	0.86
Transmembrane Helix	648	669	0.88
Cytoplasmic	670	678	0.86
Transmembrane Helix	679	698	0.91
Non-Cytoplasmic	699	729	0.88