YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17946422
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKEEGVNAF YKGLVPLWMR QIPYTMMKFA CFERTVELLY KYVVPKPRAD CTKGEQLIVT  60
   61 FAAGYIAGVF CAVVSHPADV VVSKLNQAKG ASAISVAKSL GFSGMWNGLT PRIIMIGTLT 120
  121 ALQWFIYDGV KVALGIPRPP PPEMPASLKA KQH

Type	Start	End	Confidence
Cytoplasmic	1	56	0.89
Transmembrane Helix	57	78	0.77
Non-Cytoplasmic	79	108	0.79
Transmembrane Helix	109	127	0.77
Cytoplasmic	128	153	0.73