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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33636455
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTKIIQSR FLHIYGLLCL GSLMGCIKTI GASIAQQTLA DADAPDEAKA KEREAETDAD  60
   61 ADAEGDAKAE TETGKGTREH TNGDAEADAR IMATGICIIR LITLKRFLEN SKTEEHNQRR 120
  121 QQSATSAASA APAGATSPRR RHLHYPGHSA VQPGHPEACA LLVLLLLTSL WPDCCECLHG 180
  181 GSNTVKTKYG LLRGIVVRSS PLVEAFLGIP YASPPVGSLR FMPPITPSTW KTVRSADRFS 240
  241 PVCPQNIPIP PNGPEALLEV PRARLAQLRR LLPLLKNQSE DCLCLNIYVP YETRRQRRNT 300
  301 DDTTGEPKTK LSTVVFIHGE SYDWNSGNPY DGSELAAHGN VIVVTINFRL GIFGFLKTGG 360
  361 KESAQGNFGL MDLVAGLHWL KENLPAFGGD PQSITLLGYG TGAVLANILV VSPVASDLIQ 420
  421 RTVLVSGSAL SPWAIQKNPL FVKRRVAEQT GCHGDMLYDD LAPCLRTKSV AELLAVKVDH 480
  481 PRFLVGFAPF VDGTVISPGA NPLGSTTLPL GSAIVSTSGI EYANFPKRDL IFCLTSVESY 540
  541 LDLSAQDLEF GFNETRRDRI LRTFVRNNFH YHLNEIFAVL KNEYTDWEKA IRNPLSSRDA 600
  601 TLQFLSDGHT ASPLIKLGYM HSLRGGRAYF LHFKHKTIEE EYPQRSGSVR GEDVPFWLGL 660
  661 PMSPLFPHNY TTQERQIGRL MLRYLSNFAK TGNPNQSTAK SVLPNPNEVL ETALHQQKKR 720
  721 STSLTHPNLS EALNLAVLYN QRRSNAMHEK RSYIRRRLRS NDAAFTQLGI SSERDVGSYD 780
  781 GDELPFWDAY DVVNQLYVEL GNKANIQSHY RGHKLSMWLN LIPQLHRHFN INDQSMRHHQ 840
  841 FQDDMNNRDL YEGVVRPQLQ TKPAEDDNII IMQRSRTTTP PPPSKNPSTN ATQALNPLGT 900
  901 GTPTTTECGI DGAMSVSELT TTQSPKDNRT GIVRVETQKD LATASTGIIG NLELLRRLGG 960
  961 KQFQSYTTAL IATVAVGCFL LILNVLIFAG IYHQREKRAR DAKTKEELQE GDNSKNSSIL1020
 1021 KLNALMGGGG ACGSGPGDIA DAYTLSGSVV DSKGGVGVVF GEYSCYDEKT KQLKEGKLLV1080
 1081 ELPPSSSTGQ TSLMIDNWGA CSTSTLDLLK TKPGDPIEMV TYSALPSVME STSAMSSKRG1140
 1141 SFVDTTLQFN SPQQFDYAVQ SSDQMSFKAI EDAVKAAAGH DSEITRDDDI PEPPPPPRSF1200
 1201 LAAQQQQQQQ QQQQQTGILR QTGAGGTSTS GSASGSGKKR VHIQEISV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle