YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGL2A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.97
Transmembrane Helix	72	95	0.85
Non-Cytoplasmic	96	124	0.91
Transmembrane Helix	125	145	0.86
Cytoplasmic	146	153	0.72
Transmembrane Helix	154	173	0.88
Non-Cytoplasmic	174	179	0.73
Transmembrane Helix	180	202	0.80
Cytoplasmic	203	213	0.90
Transmembrane Helix	214	237	0.88
Non-Cytoplasmic	238	244	0.75
Transmembrane Helix	245	263	0.95
Cytoplasmic	264	308	0.94
Transmembrane Helix	309	331	0.86
Non-Cytoplasmic	332	347	0.90
Transmembrane Helix	348	370	0.84
Cytoplasmic	371	386	0.85
Transmembrane Helix	387	405	0.75
Non-Cytoplasmic	406	410	0.63
Transmembrane Helix	411	433	0.88
Cytoplasmic	434	443	0.63
Transmembrane Helix	444	467	0.88
Non-Cytoplasmic	468	475	0.69
Transmembrane Helix	476	498	0.89
Cytoplasmic	499	584	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPREPAGF SKEGLKQLAG KTLGHVYRVI EKRQKPGENI ELTEDGRPAQ INERKAPLCD  60
   61 CTCFGLPRRY IIAIMSGLGF CISFGIRCNL GVAIVSMVNN STIHLNGKII IKEKAKFNWD 120
  121 PETVGLIHGS FFWGYIVTQI PGGYISSRLA ANRVFGAAIL LTSTLNMFIP SAARGHYGCV 180
  181 IFVRILQGLV EGVTYPACHG IWSKWAPPLE RSRLATTSFC GSYAGAVIAM PLAGILVQYT 240
  241 GWSSVFYVYG CFGIFWYMFW ILVSYESPAE HPTITAEERC YIEESIGESA KLLGPADKFK 300
  301 TPWRKFFTSM PVYAIIVANF CRSWTFYLLL ISQPAYFEEV FGFEISKVGM LSALPHLVMT 360
  361 IIVPIGGQLA DHLRSKNILS TTTVRKIMNC GGFGMEATLL LIVGYSHSKG VAISFLVLAV 420
  421 GFSGFAISGF NVNHLDIAPR YASILMGISN GVGTLSGMVC PLIVGAMTKH KTREEWQYVF 480
  481 LIASLVHYGG VIFYGIFASG EKQPWADPEL TSDEKCGFID EDELAEETGD ITQSYGALGA 540
  541 PAKSYGATTQ LNGGWAEGWD KREEYVQDGV EEGGYGYRQG GNYS