YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68370050, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAESKSEL FTVATGDGGD NHQNQPKKLP FFEHYIQPCL AEVVGSFLFM FVGCVSVMGN  60
   61 VGISGSIQPA LAHGLALAIA IAIFGEISGG HFNPAVSVCV YLIGGMEVIL LVPYIISQML 120
  121 GGVIAASLAK AVTTNDAFSN ATGAAFNAIP SSDGIGAATM AEMIMTLFLT IVVSMGAVNG 180
  181 RTKSQLAPFC IGLTVTANIL AGGGISGACM NPARAFGPAV VSGHWTHHWI YWVGPLTGAL 240
  241 VTVSIVRLVM GDKKVRVIFK

Type	Start	End	Confidence
Cytoplasmic	1	38	0.93
Transmembrane Helix	39	63	0.82
Non-Cytoplasmic	64	69	0.73
Transmembrane Helix	70	90	0.88
Cytoplasmic	91	97	0.66
Transmembrane Helix	98	117	0.83
Non-Cytoplasmic	118	154	0.83
Transmembrane Helix	155	178	0.88
Cytoplasmic	179	186	0.86
Transmembrane Helix	187	209	0.90
Non-Cytoplasmic	210	228	0.90
Transmembrane Helix	229	250	0.95
Cytoplasmic	251	260	0.96