YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	REEP6_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAIFTKIKD RVEAFLNEKN IVTDCLNKIE EKTGIKKRYL AYGAAGVTGA FLLLGYGASL  60
   61 ICNLIGFVYP AYFSIKAIES PGKEDDTQWL TYWVIYGFFS VGEFFSDIFL HWFPFYYVCK 120
  121 CLFLLWCMAP VSWNGSQVLY RHVVRPFFLK HEAAVDGMVS NISVKAMSAA ENVTREVLHT 180
  181 LVRNRTVGPA ESEPRSLPSS AHTEPTVD

Type	Start	End	Confidence
Cytoplasmic	1	38	0.81
Transmembrane Helix	39	67	0.77
Non-Cytoplasmic	68	98	0.67
Transmembrane Helix	99	133	0.66
Cytoplasmic	134	208	0.69