YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLMP_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMFKVSLIC SLLLVVFGAA RGFLGRGDAF RRKVSVELNP GLAPPLSLPP GVGLVHLRGL  60
   61 GDNDTLHFVL CNAGAPALLL VHSNSTRSAV TVDWPEFINS SSAGSLRVEP ESSVTYSSAL 120
  121 VFTRLWEYDD VNNTADPQKA AESSFYPPYE LQNFVWSELN TTLNQSEHTV VLCGGEKTQS 180
  181 FSNGSLCLQV SVFESQGRDE AWPSLLHNAN SSQLRVWING VTPRGNNSRF ILEFQSVGDA 240
  241 GFQSRVDMRS SIDDEYTPSI FKVSEWVSSP VNSSSVWGFS QWKPVAYRKA RPVFEDATAC 300
  301 RHSELVFVNG TPPSAVIQAY FTHNTRIYGL NISFGLAEDP VFYDATKYIS WTVLMGLGDP 360
  361 PSDSFSPLII IIITVGLVTP LVFIILGGVF VCVRKRTSQS TAYEPIN

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	368	0.99
Transmembrane Helix	369	392	0.94
Cytoplasmic	393	407	0.97