YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52219002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSFLTRLL EEIHNHSTFV GKVWLTVLII FRIVLTAVGG ESIYSDEQTK FTCNTKQPGC  60
   61 DNVCYDAFAP LSHVRFWVFQ IIMISTPSVM YLGYAIHKIA KTSEEERHKN QIYQKRRHHS 120
  121 RWRNGHHLED ALEEEDEDAE PMIYEEDARE IKAETVRDPL KHDGRRRIMQ EGLMRMYVLQ 180
  181 LLSRAIFEVG FLTGQYLLYG FRVNPSYVCN KIPCPHRVDC FVSRPTEKTI FLLIMYVVSC 240
  241 LCLLLNVCEM FHLGIGAFRD TLRKRRNQNQ RPSYGYPYSR NISSSPPGYN LVVKSDKPGR 300
  301 IPNSIVLPDQ NMDREIAEQH CTSPDENIPT DLATLHHHLR VAQEQLDMAF QTYNTKTTHI 360
  361 SRASSPVSGG TTTEQNRINM AQEKQGARPK ASTERAGTLV KNGKTSVWI

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	39	0.87
Non-Cytoplasmic	40	75	0.96
Transmembrane Helix	76	97	0.90
Cytoplasmic	98	175	0.98
Transmembrane Helix	176	198	0.83
Non-Cytoplasmic	199	231	0.91
Transmembrane Helix	232	256	0.90
Cytoplasmic	257	409	0.93