YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51859391, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTLVATLL PYWATSAHVG PNIVTAVVSM KGLWMECVYQ STGAFQCETY NTLLGLTVDL  60
   61 QAARAMMVMS SIFSVMACAV STVGMQCTVC MDGSSVKTKV AGVGGSMFLL AGLLSLIPVA 120
  121 WKTHEVVQTF YMPNMPASLK FEIGDCLYVG LASSLLSMLG GGLLTASCCD DIDGNRGSRR 180
  181 HYPYPERNPL RGPSHSMTYQ PAALHSTTNP NITNKTQTLN SHTSSGTHSI QAQDSRKMTR 240
  241 QNTAAGYDVT GYV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.69
Transmembrane Helix	9	30	0.61
Non-Cytoplasmic	31	64	0.79
Transmembrane Helix	65	89	0.81
Cytoplasmic	90	99	0.79
Transmembrane Helix	100	121	0.91
Non-Cytoplasmic	122	146	0.82
Transmembrane Helix	147	169	0.74
Cytoplasmic	170	253	0.84