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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PLXA4_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFHNRRWNF TFSCCVVVLL LPLVAARPQQ PSAATRVHEE YSTFRVENTE WTFNHLAVDH  60
   61 RNGNVYLGAV NRIYKLSPGL DIQVSHQTGP DEDNRNCYPP RIVQPCSEPL TLTNNVNKML 120
  121 LMDYRENRLL ACGSLYQGIC KLLRLDDLFK LGEPFHKKEH YLSGVNESGS VFGVIVSYGD 180
  181 ASPDKLFVAT AVDGRPEYFP TISSRKLTRN SEEDGMFAYV FHDEFVASMI KIPSDTFTVV 240
  241 PDFDIYYVYG FSSGNFVYFL TLQPEMGGGP TTGSSSAGRE QVYTSKLVRL CKDDTAFNSY 300
  301 VEVPLGCVKG GVEYRLLQAA YLSKAGTILA RSLGIGPDDD ILYAVFSKGQ KRRPKESSQE 360
  361 SALCVFTLKE INERIKDRLQ SCYKGEGTLD LAWLKVKDIS CSSALLTIDD NFCGLDMNAP 420
  421 LGVSEMVRGI PLFSESKDKM TSVIAYVYKN HSLAFVGTRG GRLKKIRVDG PTYGALQYET 480
  481 IQVVDNGPIL RDMAFSSDQH FLYVMSESQL TRVPVEACEQ YSSCNECLGS GDPHCGWCVL 540
  541 HSMCTRKEKC ERSSEPRRFA SNIKQCVRLS VHPNNISVSQ YSVMLVLEAH NVPELSAGVN 600
  601 CTFEDLAEMD GLVEGNRITC SSPAEKEVPR IIVDQGDHQI VQLYLKSKET GLAFANTSFV 660
  661 FYNCSVHKSC LSCVGSPYQC HWCKYRHTCT HDPSSCSFQE GRVKQPEECP QLLPADRILV 720
  721 PVNVVKPITL RAKNLPQPQS GQRGYECVLT IQGVEQRVPA LRFNSSSVQC QNTSYMYDGM 780
  781 EMSSLPVDLT VIWNGDFSID NPAQNKVHLY KCDARRESCG LCLKADPLFG CVWCKGENRC 840
  841 SLKQHCSYPQ SMWLEHNGIN SKCTHPRITK ITPLRGPREG GTLVTIRGEN LGLEFSEIKD 900
  901 HVKVADVECT PVPEGYIPAE QIVCEMGKAE RSQFAGNVQV CVGECRPEFM AKSSKYYYFV 960
  961 IPQLLSLKPS RGPISGGTIV NITGGNLDAG SNVSIMFKDQ KCTYQRRGGQ WITCRSHASM1020
 1021 QGYGNVSVSV YVDKAHIHKD LKFEYVEDPT ITKLEPEWSI FSGNTPLTVS GTNLDIIHTP1080
 1081 LIRAKYKNLE TINICQVLSP TTMQCMAPEL PYSISKHKDV PERPDEFGFI LDNVQSVLAL1140
 1141 NNTNFVYYPN PVFEPLSVSG VQELKPGSPI ILKGRNFLPP TPGGNGKLNY TVLIGDKPCA1200
 1201 LTVSDTQLLC ESPNLTGRHK VLARVGGIEF SPGVVHITSD SPLSSTAVIS IAGAGGLLIF1260
 1261 FIVIVLIAYK RKSRESDLTL KRLQMQMDNL ESRVALECKE AFAELQTDIH ELTSDLDGAG1320
 1321 IPFLDYRTYT MRVLFPGIEE HPVLRDLEVP GYRQEQVEKG LKLFGQLINN KVFLLSFIRT1380
 1381 LESQRGFSMR DRGNVASLIM TVLQSKLEYA TDVLKHLLSD LIDKNLESKN HPKLLLRRTE1440
 1441 SVAEKMLTNW FTFLLYKFLK ECAGEPLFSL FCAIKQQMEK GPIDSITGEA RYSLSEDKLI1500
 1501 RQQIDYKTLV VNCMHPDNEK SPEVQVKVLN CDTVSQVKEK ILDAIYKNVP YSHRPKASDM1560
 1561 DLEWRQGRVV RVILQDEDVT TKIEADWKRL NMLSHYQVTD NAVVALVPKQ VTAYNSVNNS1620
 1621 TVSRTSASKY ENMIKYTGSP DSLRSRTPMI TPDLESGVKV WHLVKNHEHG DQKEGDRGSK1680
 1681 MVSEIYLTRL LATKGTLQKF VDDLFETIFS TAHRGSALPL AIKYMFDFLD EQADKHNIHD1740
 1741 PHVRHTWKSN CLPLRFWVNV IKNPQFVFDI HKSSITDACL SVVAQTFMDS CSTSEHRLGK1800
 1801 DSPSNKLLYA KDIPSYKSWV ERYYSDISKM PAISDQDMNA YLAEQSRMHM NEFNTMSSLS1860
 1861 EIYSYIGKYT EEIVSALEQD DGARKQRLAY KLEQVVAFMS LES

YRC Informatics Platform - Version 3.0
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