YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31088360
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.90
Transmembrane Helix	114	137	0.83
Non-Cytoplasmic	138	157	0.76
Transmembrane Helix	158	179	0.77
Cytoplasmic	180	200	0.95
Transmembrane Helix	201	223	0.93
Non-Cytoplasmic	224	230	0.83
Transmembrane Helix	231	254	0.87
Cytoplasmic	255	350	0.98
Transmembrane Helix	351	369	0.92
Non-Cytoplasmic	370	387	0.85
Transmembrane Helix	388	408	0.92
Cytoplasmic	409	428	0.90
Transmembrane Helix	429	449	0.91
Non-Cytoplasmic	450	476	0.88
Transmembrane Helix	477	498	0.87
Cytoplasmic	499	512	0.85
Transmembrane Helix	513	535	0.90
Non-Cytoplasmic	536	553	0.91
Transmembrane Helix	554	575	0.91
Cytoplasmic	576	584	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVEDDSSR LEEALIQDEE SKLYTGDGSV DFKGRPVLKK NTGNWKACPF ILGNECCERL  60
   61 AYYGIATNLV KPILLAKLHE GNVSAARNVT TWQGTCYLAP LIGAVLADSY WGRYWTIAIF 120
  121 SMIYFIGMGT LTLSASIPAL KPAECLGAVC PPATPAQYAV FFIGLYLIAL GTGGIKPCVS 180
  181 SFGADQFDDT DSRERVKKGS FFNWFYFSIN IGALISSSFI VWIQENAGWG LGFGIPALFM 240
  241 GLAIGSFFLG TPLYRFQKPG GSPLTRMCQV VAASFRKRNL TVPEDSSLLY ETPDKSSAIE 300
  301 GSRKLQHSDE LRCLDRAAVI SDDERKRGDY SNLWRLCTVT QVEELKILIR MFPVWATGIV 360
  361 FSAVYAQMST MFVEQGTMMD TSVGSFKIPA ASLSTFDVIS VIFWVPVYDR FIVPIARKFT 420
  421 GKERGFSELQ RMGIGLFISV LCMSAAAIVE IKRLQLAKEL DLVDKAVPVP LTIFLQIPQY 480
  481 FLLGAAEVFT FVGQLEFFYD QSPDAMRSLC SALSLLTTSL GNYLSSFILT VVLYFTTRGG 540
  541 NPGWIPDNLN KGHLDYFSGL AGLSFLNMFL YIVAAKRYKS KKAS