YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	JGN1A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAGPRAA GTDGGDFKHR EKVASHYQMS ASSKSEIKKL TVVHFLIWIL VAAQVAVSHL  60
   61 NLVSHDLVAM PYQWEYPYLL SLVPSFIGAL AMPKNNISYL VISMISAGLF SVAPLIFGAM 120
  121 EMFPLAQQLY RHGKAYRFIF GFSAVSVMYL LMVIAIQVHA WQIYYSKKLL DAWFNSTLEK 180
  181 KKK

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	62	0.88
Non-Cytoplasmic	63	73	0.85
Transmembrane Helix	74	92	0.65
Cytoplasmic	93	98	0.55
Transmembrane Helix	99	120	0.91
Non-Cytoplasmic	121	137	0.61
Transmembrane Helix	138	161	0.88
Cytoplasmic	162	183	0.66