YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERDL9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGENSSIEK GLLLIRKEES ANTTPFLVFT TFIIVSASFS FGVALGHTAG TMASIMEDLD  60
   61 LSITQFSVFG SLLTFGGMIG ALFSATIADS FGCKMTLWIT EVFCISGWLA IALAKNIIWL 120
  121 DLGRFFVGIG VGLLSYVVPV YIAEITPKTV RGTFTFSNQL LQNCGVATAY YLGNFMSWRI 180
  181 IALIGILPCL IQLVGLFFVP ESPRWLAKEG RDEECEVVLQ KLRGDEADIV KETQEILISV 240
  241 EASANISMRS LFKKKYTHQL TIGIGLMLLQ QLSGSAGLGY YTGSVFDLAG FPSRIGMTVL 300
  301 SIVVVPKAIL GLILVERWGR RPLLMVM

Type	Start	End	Confidence
Cytoplasmic	1	25	0.81
Transmembrane Helix	26	46	0.93
Non-Cytoplasmic	47	65	0.74
Transmembrane Helix	66	87	0.91
Cytoplasmic	88	95	0.73
Transmembrane Helix	96	114	0.92
Non-Cytoplasmic	115	121	0.57
Transmembrane Helix	122	143	0.83
Cytoplasmic	144	151	0.68
Transmembrane Helix	152	172	0.72
Non-Cytoplasmic	173	179	0.75
Transmembrane Helix	180	199	0.97
Cytoplasmic	200	255	0.98
Transmembrane Helix	256	279	0.85
Non-Cytoplasmic	280	294	0.81
Transmembrane Helix	295	315	0.93
Cytoplasmic	316	327	0.93