YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GDL21_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLIPSFTAN SNEPPPSKLS LSDLSMAILK SHFFLLFPLL LLHFHTVSFA QTLFVFGDGL  60
   61 YDAGNKQFLS QNRVDASFPP YGVTVGQATG RWSDGSIVPD YLAKFMGIPK ISPILLTTAD 120
  121 FSHGANFAIA DATVLGSPPE TMTLSQQVKK FSENKNKWTN QTRSEAIYLI YIGSDDYLSY 180
  181 AKSNPSPSDT QKQAFVDQVI TTIKAEIKVV YGSGGRKFAF QNLAPLGCLP AVKQASGNVQ 240
  241 ECVKLPSEMA ALHNKKLLQL LVELSRELNG FQYSFYDFFS SIQNRVIKSK TYTFETGNAA 300
  301 CCGTGSINGS NCSAKNVCAK PEEYIFFDGK HLTQEANLQV GHLMWGADPE VIGPNNIREL 360
  361 MVLPLDITVI LAGIQEAMAA MRPRQSNIES LYDIKKMESE MDNHWLYQVD KAISFMI

Type	Start	End	Confidence
Signal Peptide	1	50	0.61
N-region	1	41
H-region	42	47
C-region	48	50
Cleavage Site	50	51
Non-Cytoplasmic	51	417	0.98