YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33589398
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDAPEDQSV TVSMPASASG SAAGSTGPSS DRRMTQRLLV ELLVVVVLVI PICVYEFAVD  60
   61 PVRRGFFCDD ESISYPFQDN TITPVMLGLI VGLLPALVMV VVEYVSHLRA GDISATVDLL 120
  121 GWRVSTWYVE LGRQSTHFCF GLLLTFDATE VGKYTIGRLR PHFLAVCQPQ IADGSMCSDP 180
  181 VNLHRYMENY DCAGEGFTVE DVRQARLSFP SGHSSLAFYA MIYVALYLQR KITWRGSKLS 240
  241 RHFVQFAVVM VAWYTALSRV MDHWHHWSDV LSGSLLGVAG ALITAHYIAR MFDDGASNIL 300
  301 SGGLRRENTA ATLQEEVCPT TPPPYSVNNS FSEDQYCSKV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.95
Transmembrane Helix	38	59	0.92
Non-Cytoplasmic	60	81	0.95
Transmembrane Helix	82	105	0.86
Cytoplasmic	106	238	0.79
Transmembrane Helix	239	257	0.91
Non-Cytoplasmic	258	269	0.63
Transmembrane Helix	270	289	0.92
Cytoplasmic	290	340	0.90