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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SIFR-PC, SIFR-PA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAASGRIRK RKHKSHTSGD VPSTTTSVPM PIPTMAPGKM VAETMEEAAA LAGDYNNFTH  60
   61 NFVDLQNLLS FNELNGTSGS GGTAVSSLGS SSAIKLNNSA ITDTLLGTVL TTATATVAPA 120
  121 ASSLLATLAA TTTASARGSL AGKSLAIADA TSSTYYSNLL NLSPATTSLI SAAAATKSYN 180
  181 DSALRWEQLD GSVDFGFDPL YRHSLAMSMV YCVAYIVVFL VGLIGNSFVI AVVLRAPRMR 240
  241 TVTNYFIVNL AIADILVIVF CLPATLIGNI FVPWMLGWLM CKFVPYIQGV SVAASVYSLI 300
  301 AVSLDRFIAI WWPLKQMTKR RARIMIIGIW VIALVTTIPW LLFFDLVPAE EVFSDALVSA 360
  361 YSQPQFLCQE VWPPGTDGNL YFLLANLVAC YLLPMSLITL CYVLIWIKVS TRSIPGESKD 420
  421 AQMDRMQQKS KVKVIKMLVA VVILFVLSWL PLYVIFARIK FGSDISQEEF EILKKVMPVA 480
  481 QWLGSSNSCI NPILYSVNKK YRRGFAAIIK SRSCCGRLRY YDNVAIASST TSTRKSSHYH 540
  541 QNSSRKSPSS KGNAVSYIYE HNSLRRHNMM LKQDSNLSQQ MLLKQDSHGS RQFLIKQESS 600
  601 CSDASGIRRP LCQQDSNGSK VSLSKQDSIV SYMEARRSAG HGLNDTLVDR DSVSMDVGRR 660
  661 QGATPSSLLD KRQKFVKQDS VISFVDQRPE QRRHQLVKQD SVISFADQRR GLLHKQDSLM 720
  721 ANRTGDAPTH HVSILKKTDS QLSYGSSTSP RRNADLYE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle