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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33589374
Protein type: Transmembrane
Type Confidence: 0.62
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIISKDLFIF GEQIFATIIP EGGAAALATQ QQHQQQHQQQ HQQSHQQPHQ QSQQQQQQQQ  60
   61 PAIINSTTTT ATSLVINSTA GAAEQVVEES LKVAAAAAAA TTTTTAAAAT TLPAKQETVA 120
  121 VAAACVAPRK LAKIQKIPKE PEELKAKKKA KCEAAAAATH YEKMPMNLMI VESVEAVDMG 180
  181 SSDNDNETTE QVPLVSASRR NLAKIVADCR LQIEVEPATS AVAAAAAAAA SVASPPATSD 240
  241 ATAATSVASS DSSASSSASS TSSSSSSSTS SEFTHTSQTT IPSTDNLTSS NGLANIGKSI 300
  301 LVDAKSNSPA SLSYHFEKSA AANQQKQHHN INICNSHHPH HHSQNQPQHS LQLTFQNLNV 360
  361 LHNERQILSD VSGFVSPCEV LAIMGPSGSG KTTLLDCLSG QRHIDSGSVF LNREPLTKKW 420
  421 RRRIGYVLQE EIFFPQLTLR ETVVYTALLR LPESMPRAEK MRQVDHILEA LELGCCQQTK 480
  481 FGDYLNRGLS GGEKKRANIA CELLTNPLLM LLDEPTSGLD SHSAISLMKV LKRYAQLEQK 540
  541 TIVISVHQPS SQMFHMFDKL LLLHQGRTAY FGDVQNIYRH FEDIGVTIKP HYNPADFVLE 600
  601 QLKSHPDIRE KLFIAAKESH GNYLNRNCIT SSHHNQVSVS GAKGKKQADS ILIDDIINNY 660
  661 YNQRSNRHHH QYENLHHTSN GCRVEEDEEA AQHLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle