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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Sema-5c-PB
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILKLPKMF SQLWLLLILS LLTLEGPQPS TGSGYTTKSS VDLLENDSRY ISYQDLMSTA  60
   61 KRFYDPETTW YSEMLFDVAR NQVIVGARDT LYRMSFDLEP LERASWGATP SEIAMCQAKG 120
  121 QSERWCRNYV RVLHSYGENQ LYACGTNAFQ PSCSWRQMEN LTVTGVDSGV VKCPFHPQAN 180
  181 STSLLQSNGQ LFVGTATDFS GSDVAILRTG VESNKRFLRT KQYNNNWLSG AQFVGSFEAG 240
  241 HFVYFLLRES AAEHMSCGKV IYSRVARVCK NDVGGGGQLL RDNWTSFLKA RLNCSLPGEY 300
  301 PYYFDEIQGM TYAESESILY ATFRTSGSSI FGSAVCAYNL SSINAAFDGP FKQQEHSDAA 360
  361 WKTVNTNQRS QFQCGTSSIG HWLESSRYQL MDEAVQPIGA EPLYHSKLEQ FGRLALDIIN 420
  421 TKTEQVHVLF VASSGNHIKK LSVKYDGDGV QTCLVELWQA DDTGTSSLLN MAYLKVSDSL 480
  481 YLGTDLALTR IPAQHCSRHV SQSSCLNSMD PYCGWNELVE RCMPQPQDSS VLQHWHQAPQ 540
  541 ITCPVLNAPI DGGWSTWSPW AVCQQHEQPD SNCQCRQRSC NNPQPQHGGA TCEGISTQVT 600
  601 NCTQHGGWTE WSAWSPCSQT CGIAVKIRRR TCGNPRPAFG GRTCVGSEQS EMYCRHLPPC 660
  661 PVAKPQSVDG GWGPWGEWSE CSAQCGGGFR MRRRECNDPA PLNGGMECPG CRLDYEECNM 720
  721 QSCQEVRKLS AWTPWLTVTG SGNSSEPHME RRFRFVCRAT SPDPSSVRIG LPKEESRNCH 780
  781 ADGSCQRQVD HDSADSDAAD WSPCSVSCGG GVQQRHRGRG SQSRVCNIHA CPAEEQLSSN 840
  841 SLDNELEHGE WGCWSEWSAC SVTCGLGLRR RTRRCLAGHD RLCQGRALEE QKCEMVPCED 900
  901 FLGWSAWSEW SSCSSDGIRL RHRRCLVEQP GSMECRGAEF EKTACVPNEC EETQTASTAT 960
  961 LPIVIFVGLL FTVACCLATY RFTKKRFMLS AEEALNKTTT TTASFDTYPN QYSSLPTKDY1020
 1021 YDQRPKRQSS FRMPAKTSNL GNGNGTLNRN NMHQNNTPKV LAKTYIDCES GTIKRQSALN1080
 1081 NCRSNIDDEK F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle