YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33589332
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGDLGHGLI LLLFASWLII KEKQLSSIKE EIFNIFFGGR YIIFLMGIFS IYTGFIYNDV  60
   61 FSKSMNIFGS AWHMNYTRDV VEDENLKYIT LRPNDTVYKT YPFGMDPIWQ LADNKIIFLN 120
  121 TFKMKLSIIV GVIHMIFGVS MSVVNFAYYK KYASIFLEFL PQVLFLLLLF GYMVFMMFFK 180
  181 WVVYNDTVEG PLSPACAPSI LILFINMILQ GSQDTPEPCK EFMFDGQKSI QQVFVVVAII 240
  241 CIPWMLLGKP LYIMIKRKTN GAPPPKPQSG GGEGHGEDDE MGEIFIHQAI HTIEYVLSTV 300
  301 SHTASYLRLW ALSLAHAQLS EVLWNMVFSM GFKYDSYIGG ILIYVFFGAW ALLTVGILVL 360
  361 IEGLSAFLHT LRLHWVEFMS KFYEGAGYAF EPFAFKTILD VSEDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.79
Transmembrane Helix	5	20	0.80
Cytoplasmic	21	35	0.74
Transmembrane Helix	36	56	0.90
Non-Cytoplasmic	57	125	0.82
Transmembrane Helix	126	149	0.89
Cytoplasmic	150	158	0.72
Transmembrane Helix	159	182	0.84
Non-Cytoplasmic	183	229	0.64
Transmembrane Helix	230	248	0.92
Cytoplasmic	249	305	0.67
Transmembrane Helix	306	328	0.62
Non-Cytoplasmic	329	339	0.62
Transmembrane Helix	340	368	0.79
Cytoplasmic	369	405	0.76