YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28476395, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDFVHTFLE VISSINPLLL IGIAFVAVVL ETSILIGLVV PGDAVIIVAS LGVKNFGEYL  60
   61 LLLIAVIFGS FVGETCGFLL GKFFGKSLRK IKFKNLKFDR ANSLIQQHEW KALLISRFTP 120
  121 VLHSVVPVAA GIAGLKYKKF IFWTMISCTL WAVLYVTFGF LAVSNYRELS GKLHYAALIF 180
  181 FAILVGFVTL ITVIKKFAKK YSDNKDSAIQ NNSLHFAAIW ENRMHELLRK WARKRKRVEI 240
  241 INPVMGYGSE EWIRVLGRVL MVNPKSAKKN KDIRGWRSFF SIPVPGVLVK ARICKCKNYA 300
  301 PTIGQSIGTQ NASMDDSFCT CNPVEYFFRA DRGGVIDAKV PVKLSPGMHT VYLATPRSGS 360
  361 FRCQIAIVSK RVKIGFVSDI DDTIVVTRLP RVLVAAWNTF VVNERARHPV SGMNVLFELL 420
  421 ARANPGAPFI YLSTGAWNTA AALERFMTRN IYPQGPLLLT DWGPTHDRWF RNGNQHKREN 480
  481 IERLISEFPR IKWVLIGDSG QHDEGIYTEF ALRYPKNVEL ILIRRLFAFE AFFIGRFLRR 540
  541 KQKKSTLKIV RYGYDGSDML NEIRMLPKSN FTIRI

Type	Start	End	Confidence
Cytoplasmic	1	17	0.75
Transmembrane Helix	18	40	0.88
Non-Cytoplasmic	41	59	0.76
Transmembrane Helix	60	84	0.90
Cytoplasmic	85	139	0.77
Transmembrane Helix	140	163	0.91
Non-Cytoplasmic	164	172	0.52
Transmembrane Helix	173	194	0.93
Cytoplasmic	195	575	0.52