YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54208706, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRLSNNLI GVLNFVTFLL SVPILGAGIW LGHRADGTEC ERYLSAPVIA LGAFLLAVSL  60
   61 AGLVGACCRV TWLLWAYLLA MFVLILVLFC FTVFAFVVTN RGAGEAVSGR GYKEYRLGDY 120
  121 SNWLQKRVEN TRNWDRIRSC LQDSKVCKSL QDKNETVAQF MSSSLSPIES GCCKPPTSCG 180
  181 YTYVGGTDWT PVTTNSTDPD CKTWSNDASA LCYNCQSCKA GVVATFQRNW KRVAVVCIVF 240
  241 LVFIIIVYSV GCCAFRNNRR DNAYRGGWKG GYA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.56
Transmembrane Helix	10	32	0.92
Non-Cytoplasmic	33	42	0.58
Transmembrane Helix	43	67	0.86
Cytoplasmic	68	73	0.48
Transmembrane Helix	74	98	0.89
Non-Cytoplasmic	99	232	0.60
Transmembrane Helix	233	255	0.90
Cytoplasmic	256	273	0.59