YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU5M_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	37	0.77
Transmembrane Helix	38	59	0.87
Non-Cytoplasmic	60	83	0.84
Transmembrane Helix	84	106	0.85
Cytoplasmic	107	116	0.80
Transmembrane Helix	117	134	0.93
Non-Cytoplasmic	135	140	0.72
Transmembrane Helix	141	160	0.94
Cytoplasmic	161	171	0.86
Transmembrane Helix	172	191	0.91
Non-Cytoplasmic	192	208	0.72
Transmembrane Helix	209	229	0.77
Cytoplasmic	230	242	0.72
Transmembrane Helix	243	263	0.92
Non-Cytoplasmic	264	270	0.77
Transmembrane Helix	271	292	0.94
Cytoplasmic	293	299	0.80
Transmembrane Helix	300	319	0.84
Non-Cytoplasmic	320	327	0.58
Transmembrane Helix	328	349	0.85
Cytoplasmic	350	365	0.89
Transmembrane Helix	366	387	0.90
Non-Cytoplasmic	388	404	0.92
Transmembrane Helix	405	428	0.89
Cytoplasmic	429	455	0.93
Transmembrane Helix	456	476	0.87
Non-Cytoplasmic	477	486	0.73
Transmembrane Helix	487	508	0.89
Cytoplasmic	509	581	0.98
Transmembrane Helix	582	603	0.93
Non-Cytoplasmic	604	609	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMTSSILM ILILLTTPII ISMTNLPKLI DFPSYATSSI KFSFLLSLLP LLLFFHHNTE  60
   61 YMITNWHWLT INSIKLTMSF KIDYFSILFL SVALFVTWSI MQFSSWYMHS DPHINRFIKY 120
  121 LMMFLITMLI LTSANNLFQL FIGWEGVGIM SFLLIGWWYG RADANTAALQ AILYNRVGDI 180
  181 GFILAMTWFC LNMNSWELQQ IFLTNTNNLV PLTGLLIAAT GKSAQFGLHP WLPSAMEGPT 240
  241 PVSALLHSST MVVAGIFLMI RFHPLTSNNS TIMTAMLCLG AITTLFTAIC ALTQNDIKKI 300
  301 VAFSTSSQLG LMMVTLGINQ PYLAFLHICT HAFFKAMLFM CSGSIIHSLN DEQDIRKMGN 360
  361 MMKAMPFTSS CLIIGSLALT GMPFLTGFYS KDLIIEAINT CNTNAWALMI TLIATSMTAV 420
  421 YSMRIIYFVT MTKPRYSPLI TINENNPNLI NPIKRLALGS ILAGFLISLN IPPTNIQILT 480
  481 MPWHLKMTAL LITILGFAIA LELNNLTLNL SMSKPTKLSS FSTSLGYYPP IMHRIIPQKT 540
  541 LNSSYKLSLN LLDLIWLEKT IPKSTSITQT QLSKMMSNQK GLIKLYFLSF LITISLIFIL 600
  601 HTLNPEWFQ