YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU3M_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLLIIITIN ITLSFILISI AFWLPQMNLY SEKANPYECG FDPTSSARLP FSMKFFLVAI  60
   61 TFLLFDLEIA LLLPLPWAIQ TTNTTTMMAT AFILVTILAL GLSYEWTQKG LEWTE

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.57
Transmembrane Helix	5	25	0.91
Cytoplasmic	26	54	0.58
Transmembrane Helix	55	77	0.87
Non-Cytoplasmic	78	83	0.51
Transmembrane Helix	84	106	0.86
Cytoplasmic	107	115	0.60