YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15741079
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WFLIGWYADN WFKIKDPAIN CTVENMTEAV EGHITTEIVM LNPETVRGAS NLTSQEFIAQ  60
   61 LMSRLGGKNP EETGGFQEAP LAYDAVWALA LALNKTVAPL RAKGWGLEDF NYNNKEITAE 120
  121 IYRALNTSSF EGVSGHVVFD AQGSRMAWTL IEQLQGGSYK KIGYYDSTKG NLSWYGNDKW 180
  181 IGLSPPADQT KVIKEFRYLS QKLFVSVSVF AGLGILLGIV CLSFNIYNSS VRYIQNSQPY 240
  241 LNNMTAVGCV LALAAVFPLG IDGLHVRRTQ FPVVCQFRLW LLGLGFSLAY GSMFTKIWWV 300
  301 HTV

Type	Start	End	Confidence
Cytoplasmic	1	202	0.90
Transmembrane Helix	203	226	0.91
Non-Cytoplasmic	227	243	0.80
Transmembrane Helix	244	266	0.87
Cytoplasmic	267	276	0.82
Transmembrane Helix	277	299	0.88
Non-Cytoplasmic	300	303	0.80