YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31321896
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRQLFSAV LLVLAFVSLQ KLCYCDDQTV LYESFDEAFD GRWIVSKNGD YEGVWKHEKS  60
   61 EGHDDYGLLV SEKARKYGIV KVLDEPLNLK DGTIVLQYEV RFQEGLECGG AYLKYLRPQE 120
  121 AGWTPEGFDS ESPYSIMFGP DKCGATNKVH FILKHKNPKS GEYVEHHLKF PPSVPYDKLS 180
  181 HVYTAILKPD NEVRILVDGE EKKKANLLSG EDFEPALIPD KTIPDPEDKK PEDWDERAKI 240
  241 PDPNAVKPED WDEDAPMEIE DDEAEKPEGW LDDEPEEVDD PEATKPEDWD DEEDGMWEAP 300
  301 KIDNPKCEAA PGCGEWKRPM KKNPAYKGKW SAPMIDNPAY KGIWKPRDIP NPDYFELDRP 360
  361 DYEPIAAIGI EIWTMQDGIL FDNILIAKDE KVAESYRQTT WKPKFDVEKE KQKEEEKAAE 420
  421 SADGLKSYQK VVFDLLNKVA DISFLSAYKS KITELIEKAE EQPNLTIGVL VSIVIVFFSL 480
  481 FIKLIFGGKK ASPAASVEKK KPEVGESSKS GDESEKKEET AAAPRKRQPR RDN

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	464	0.99
Transmembrane Helix	465	486	0.90
Cytoplasmic	487	533	0.96