YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33358356
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.96
Transmembrane Helix	67	86	0.86
Non-Cytoplasmic	87	125	0.89
Transmembrane Helix	126	144	0.84
Cytoplasmic	145	154	0.81
Transmembrane Helix	155	177	0.84
Non-Cytoplasmic	178	213	0.59
Transmembrane Helix	214	239	0.62
Cytoplasmic	240	339	0.67
Transmembrane Helix	340	360	0.94
Non-Cytoplasmic	361	372	0.83
Transmembrane Helix	373	393	0.91
Cytoplasmic	394	449	0.86
Transmembrane Helix	450	468	0.71
Non-Cytoplasmic	469	475	0.81
Transmembrane Helix	476	496	0.94
Cytoplasmic	497	506	0.81
Transmembrane Helix	507	528	0.90
Non-Cytoplasmic	529	547	0.86
Transmembrane Helix	548	567	0.95
Cytoplasmic	568	582	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIPRYHLIP TNCILSYHIK MSYLTDILKL FSLETLDTRL YPSSNTAKKQ SIIKQANPKS  60
   61 RWSTIEFKFY YLVFLIIVPL MFKAGMESAN ENNPNYPKYE HLLSNGWIFG RKVDNSDQQY 120
  121 RFFRNNFPLL CLLIIIHVGL RRVINRIIPL SSKRTYFDFI FGIIFLIGAH GVNVLKLSIH 180
  181 LLINYLIGKY IKNYKLSLWI TWIYGISSLF FNEWYGNYTL GLSFLSTGYT GIIPRWDVFY 240
  241 NFTLLRMISF NFDYLERQQK LNNMTLPKEE SNGSLLNLDD RERLTAPLPI EDYNIFNYIS 300
  301 YLTYTPLFIA GPILTFNDYI YQSNYQQSSS TKDYHRIMMY LIRFIFCLLT LEFILHFMYV 360
  361 VAASKTKSWE GNLPFQISML GMFNLNIIWL KLLIPWRLFR LWSLLDGIDP PENMIRCMDN 420
  421 NFSALAFWRA WHRSYNRWII RYIYLPMGGG GKYRILNSLL VFSFVAIWHD IELKLLMWGW 480
  481 LVVLFLIPEI SVTMIFKKYR NQWWYRHLCG VGAVINIWMM MIANLVGFCL GTDGMWKLLH 540
  541 DLFKTFDGVR FLIISSGALF VGAQIMFEIR ESEMRKGINV RC