YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33302358
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKAAMDASN ETNPNYPKFA HLLSQGWMFG RKVDNSDQQY RFFRDNFPLL CGLVLLHTSL  60
   61 RRGVNLIAGN HKRTGFDFVF GXDIHLCSTR DEFLPYFDSL GYXIFPFLKY IKRNDVATXT 120
  121 YVDXTAILSL FLNDNYXSCT IWNRFYRSWI SEVSFQDGMC FSISHCXRML SYNLDYIEKR 180
  181 KSASEESNLE LKNSSSSLSE LDDRERLVAP IPLTDYNFVN YMAYITYAPL FIAGPIITFN 240
  241 DYIYQSDYKA MSSVKDYKRT FIYFLRFAFC ILVMEFLLHF MYVVAVSKTK AWEGDTPFQL 300
  301 SMLGLFNLNI IWLKLLIPWR LFRLWSLIDG IDPPENMIRC MDNNFSTLAF WRAWHRSYNR 360
  361 WIIRYIYIPL GGGGKYRILN SLCVFSFVAI WHDIELKLLM WGWLVVIFII PELAATAIFK 420
  421 NYQHEPWYRH VCALGAVINI WMMMLANLFG FCMGKDGTMS LIKTLFTTAV GLRFLFLSLG 480
  481 ALFVGSQVMF ELREAEKRRG VNVKC

Type	Start	End	Confidence
Non-Cytoplasmic	1	220	0.64
Transmembrane Helix	221	243	0.67
Cytoplasmic	244	261	0.94
Transmembrane Helix	262	283	0.93
Non-Cytoplasmic	284	297	0.84
Transmembrane Helix	298	317	0.92
Cytoplasmic	318	372	0.86
Transmembrane Helix	373	391	0.67
Non-Cytoplasmic	392	398	0.77
Transmembrane Helix	399	419	0.95
Cytoplasmic	420	429	0.74
Transmembrane Helix	430	451	0.91
Non-Cytoplasmic	452	468	0.78
Transmembrane Helix	469	490	0.90
Cytoplasmic	491	505	0.91