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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SUB_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.81
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTRWEVFF GLSVLALTMP FSAGVTNLRD VSAINNLYIT LGAPSLHHWL AFGGDPCGEK  60
   61 WQGVVCDSSN ITEIRIPGMK VGGGLSDTLA DFSSIQVMDF SSNHISGTIP QALPSSIRNL 120
  121 SLSSNRFTGN IPFTLSFLSD LSELSLGSNL LSGEIPDYFQ QLSKLTKLDL SSNILEGHLP 180
  181 SSMGDLASLK ILYLQDNKLT GTLDVIEDLF LTDLNVENNL FSGPIPPNLL KIPNFKKDGT 240
  241 PFNTSIITPP PPPVVDPPPA THRAPPVPRI PPVSGVPPAP FAPFAPLQPQ QHPPPSPPLV 300
  301 WSPPSSDNGG GDPWNSVSGQ PTLQISPPSG SGSGKFWSTQ RIILVVSSVA IIVLVSGLCV 360
  361 TLWRCCRSKI YNRYYSGARK DLQRPYFNKP PSQPTPTMGK VSREPMVKPF DGYGAGDRKY 420
  421 GYPMPQRAEE SRRAMPPTSY YNKDVNTPQK PLQQPPRQFQ SNDTASKRAA HFPPGLNSSS 480
  481 SATVFTIASL QQYTNNFSEE NIIGEGSIGN VYRAELRHGK FLAVKKLSNT INRTQSDGEF 540
  541 LNLVSNVLKL KRGHILELLG YCNEFGQRLL VYEYCPNGSL QDALHLDRKL HKKLTWNVRI 600
  601 NIALGASKAL QFLHEVCQPP VVHQNFKSSK VLLDGKLSVR VADSGLAYML PPRPTSQMAG 660
  661 YAAPEVEYGS YTCQSDVFSL GVVMLELLTG RRPFDRTRPR GHQTLAQWAI PRLHDIDALT 720
  721 RMVDPSLHGA YPMKSLSRFA DIISRSLQME PGFRPPISEI VQDLQHMI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle