YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985382
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSHIISLV LTTSQLCTAT WNPSPGARRV HDRSEFGILQ NKSANDAARN APIPSSSHST  60
   61 KAAAPSKAVS SSATTPTAAA KAKGSALPMQ DEIKRLPEFC KKDYHYIQNA IQLNQLQSEC 120
  121 NIVDGNIYIL GYQEPVIDLG NINTIVGDLI IEQSSELLRV QGRNLNYIGQ TFKLHDLTSL 180
  181 TEVDLPRLKH FTTLYWRVVP ILQTVTMEPR ISSVRSVLIS DTSLITIEGF YGAEELEILN 240
  241 INNNRYMDHI KTDVKRITTQ LSISANSENL AVEMPELLVA DNVTIRDAAS VDFPKLEYVN 300
  301 QSLELIENNF ESLEMPKLKR IGGTFGLIDN KNLEKINLAS VTVVSGGLMV SNNTKLTTLD 360
  361 FLPELQQVGG AIHFEGTIED TRFPKLRLVK GSAMIDSGEG KLDCSKWTRP LSGNSIVRGG 420
  421 QLECTSAGKR NTVSVSKDGV VIDRDTTEVV HPNENSAGSI MSKNQLGKLV WSLGFGWMVF 480
  481 LLIFVTLQ

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	468	0.97
Transmembrane Helix	469	487	0.88
Cytoplasmic	488	488	0.89