YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985339
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSSRRNGT SASSASEKGS SIQSTVRFLT LNTWGLKYVS KFRQERLCAI ADKLAGYDNF  60
   61 LQLVDYRDVS DSNYTPEEDA DEYDVVALQE VWCKKDWDYI VDRCKGRYPY HRWFLSGIVA 120
  121 GPGLAILSKI PIESTFLYRF PINGRPSAFW RGDWYVGKSV SITLLRPTGP NAAPLCIMNS 180
  181 HMHAPYGLDG DEAYECHRAC QAWDFSRLAS VYRKSGYAVV IVGDLNSRPG SLPYKLLTHE 240
  241 TGLEDSWEQL NGEQDLQYIA RLLPMDQIKY GGVTCNSTLN TWRADRGPQE ACRLDYALVD 300
  301 PDRLETIKAS VRFTERIPNV GSFSDHFGYS CTFRVLAGGA APRAPTREEL LARITAHEDL 360
  361 LQLIYTYMST ARWQQVWRAG HFWISVIIVA ATTVITAITS TIAGWSSIFW LLFAVFVATT 420
  421 GLINGLISFL FGNSEIRALE EVGQEVRDSK RAIQTSVESE F

Type	Start	End	Confidence
Cytoplasmic	1	378	0.71
Transmembrane Helix	379	402	0.89
Non-Cytoplasmic	403	407	0.65
Transmembrane Helix	408	431	0.90
Cytoplasmic	432	461	0.78