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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44985310
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDGGTPPP RGEIKLLKLI PVLLKEASLD SPSFRATVNY FDLQLERTEK WIRTTSEITK  60
   61 GRYHNSLDEF KQVSLSLIDF ILPEDTYLNH GTVEEQIYTP KLVSKCRDGI RDMFHGVLEV 120
  121 IQGNPELYLS ILLDVVKSVI DPYKDAWKNF EYYQSKYDGM LAKYQGLQWT ESTPHRIRDE 180
  181 ALLLYDYYDG YLDAALQLVL VISDVKMRYD SLIFSLATCL LPVQGSLVPK PTSTYEKWAA 240
  241 FHKMHEKWNR ERMEIYSQLP QEIYEVKDQI REYRLSHTKP SPDINHYDLR RINSKRFEIL 300
  301 EPLQKRNIEG WLWMKTKVGA PRRVVWVKRW CFIYNGIFGI HLLSPDKTAV EETDRFGVLL 360
  361 LSAMHHPEEA RKYCFRMTIS SPLTSSPQEE YSNNSGTLIF QATSYKELTA WIGALHETKE 420
  421 HVISQGKTSA AYTRAARRYP PLFTEFACKS KTEKDKFLTT EISPVRSLVE LASRPNEDQQ 480
  481 ISQLDNFGTR APIFTSLTKL SVIASAYTIP DDVPSAITAN FSGTIHWNEW CISSRGTADL 540
  541 KGPSTDDSRE VLNTWEPLYC PENFPADLKT DSSILRMLFM DSKTQPSVGD LVLESITCVW 600
  601 QANNRQKFWG TVYVTSDCLY FYMNMVGFVC LFRKALSQVI SIEPDIDLSN NKNSEGIIRI 660
  661 YCMDGAPLKL MVFFTSAEVV AQKLQHLIDN LASQTPVGIS KVIESLNIID ERLTHEEHAR 720
  721 VNTQTPNITS RPECDLFHYL STDVRKSVIR KNEIYKEPGV FVFRHEFCIR PKGLMHLLFG 780
  781 DHSNLFSSFF LLARGSDDTR IQSPWMFESA NGNEKTLVRT ISFNLNLQRG YVSSPANGSN 840
  841 SHQHQAYFTV THRIVKMIDE IYYEVDQESA ILDISFTKPF KVHVKYLITS SNLPGNSPNN 900
  901 SSHPDVSTMS IHYKVEFLNR NTMQPTDKLD FRDQIINRIA SYFCYQEASL IESTVNNCLK 960
  961 RFGKHGKFMK ALRFGGRIGV SACLPNKISD DVLVSKIRLA KTTICKLALK WVLWDIFNCF1020
 1021 RSILHAAFKL VYDTLTTVAS LNRLVLFILM LSILGNFYLM GKTATSYWSA RKAASIIHKY1080
 1081 TSVNDHLMRR AISINDLDIL TNQLATDNPA PLAKFLDIAE RSDPGLQARR QNLAIRRNNL1140
 1141 LVELNIVKMV EQELIRGGYR KFLLEESRVC SEYARGAGDS WSNHPRLQEY CNSVVSELDN1200
 1201 IS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle