YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45199146, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	402	0.85
Transmembrane Helix	403	422	0.79
Cytoplasmic	423	436	0.69
Transmembrane Helix	437	460	0.80
Non-Cytoplasmic	461	484	0.79
Transmembrane Helix	485	507	0.88
Cytoplasmic	508	527	0.77
Transmembrane Helix	528	551	0.88
Non-Cytoplasmic	552	568	0.79
Transmembrane Helix	569	591	0.88
Cytoplasmic	592	608	0.78
Transmembrane Helix	609	632	0.91
Non-Cytoplasmic	633	652	0.79
Transmembrane Helix	653	673	0.91
Cytoplasmic	674	680	0.70
Transmembrane Helix	681	702	0.87
Non-Cytoplasmic	703	711	0.70
Transmembrane Helix	712	735	0.91
Cytoplasmic	736	745	0.80
Transmembrane Helix	746	772	0.84
Non-Cytoplasmic	773	793	0.75
Transmembrane Helix	794	817	0.87
Cytoplasmic	818	835	0.76
Transmembrane Helix	836	859	0.84
Non-Cytoplasmic	860	869	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSLKYN AVPEWQDHYL NYSGLKKLIY ALQAEELQYI SGSGERGSGN EKTVTKLKNI  60
   61 FRRGGRKQRD EECFELEDVH EKTHELRAQS KLSPETQSSI SSDGTAFNPR DVFVARLVEE 120
  121 RDLIDRFYKR LEIDLYKQQE TLLKDLENAG ATRPEQHAYH EAFEAHAQSG IATRVRTNDS 180
  181 VLSAVSRRLS VHEPNMSEDE DEDEEEYDDA TAPHTALLNY ADFNIKSQKR SILKKKIIDL 240
  241 YVELSQLKSY IELNRIGFFK ITKKFDKTLS CTVRSDLIES GELFKETYVF QPSTFDNLDN 300
  301 NISQLVEFYA VITDNDDIEE CRHELRSYLR DYIVWERNTV WKDMLGLEST ANNIASGGKQ 360
  361 DGDSADNIRQ LEYFTYHLRK PIGVRNLVIS QLKVPKCLFT LRALKLYVIL ALTLVLLNVK 420
  421 TFNDPAQKRC MALVECVALL WATEALPLFV TAMFVPLLVV LMQVLKDDKG EVLTAAAASS 480
  481 RVLSLMWSST IMVLLAGFTL AAALSKYNIA RVLASYLLTA AGTKPRNLLL VVMCVVFFLS 540
  541 MWISNVAAPV LTYSLINSVL RTMSSETPFA QALVLGVALA ANIGGMASPI SSPQNVISMD 600
  601 YLKEYNVGWG QFFAVSLPTC VISLALVWLL LIFTFKINTT TLKAYKPIKD GFTLKQYFII 660
  661 AVSLATILLW CVLSRIEGTF GSAGQIAVIP LVLFFGSGLL STQDINNFPW SIVILAMGGI 720
  721 ALGGAVSSSG LLATIARSLQ ARVMDYSLYA VLVIFGLVML VVGTFVSHTV SAIIIVPLVN 780
  781 EIGTHLPNPK ASPVLVFGSA LIASCGMGLA SSGFPNVTAI SMTDEIGNRY LSVNTFITRG 840
  841 VPASILAYLC VITIGFGIMN SVLSGVQPA