YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45199142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVMKESLA KVLDQYPVLE DYVPTLDRPF MNISLWDHFD KSVAWLSNGK FVPHEFHFIP  60
   61 GQLPLSELPQ VLAAIATYYV VIFGGRALLQ KSEPFKLNVL FQLHNLFLTT VSLGILLLMV 120
  121 EQLVPILARH GLFYAICNIG AWTQPMVTLY YMNYIVKYIE FIDTVFLVLK HKKLTFLHTY 180
  181 HHGATALLCY TQLMGTTSIS WVPITLNLAV HVVMYWYYFL AARGIRVWWK EWVTRFQIIQ 240
  241 FVLDIGFIYF ATYTKLAYDY FPQLLHCGNC VGSAAATFSG CAIISSYLFL FIAFYIEVYR 300
  301 RKGSKKSRVV KRVRGGVAAK VNEYVNIDVD TTGTPSPSPK PKQRKARSNK H

Type	Start	End	Confidence
Non-Cytoplasmic	1	67	0.56
Transmembrane Helix	68	89	0.76
Cytoplasmic	90	99	0.62
Transmembrane Helix	100	120	0.88
Non-Cytoplasmic	121	130	0.47
Transmembrane Helix	131	154	0.73
Cytoplasmic	155	173	0.55
Transmembrane Helix	174	194	0.55
Non-Cytoplasmic	195	200	0.68
Transmembrane Helix	201	220	0.92
Cytoplasmic	221	235	0.80
Transmembrane Helix	236	253	0.94
Non-Cytoplasmic	254	273	0.84
Transmembrane Helix	274	296	0.94
Cytoplasmic	297	351	0.98