YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45199123, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPIVFNSET ISGITGSISI ACWVIVFVPQ IYENFRRKSA EGLSLLFVVL WLAGDIFNLL  60
   61 GAILQHLLPT MIVLAAYYTV ADIVLWFQCV FYGQDSEVDP VHLSPANPIH DGILDEVLNE 120
  121 RQPLLHEHEA AENLDNESQE TPSSIAKGAE SSLDVIKRRS PIRRYIFNAL VVITVVLGGF 180
  181 LAWYVSYSRN YGSEPVEPDL NMNLLAQIFG YLSAVLYLGS RVPQILLNFK RKSCEGISFL 240
  241 FFLFACLGNT TFIISVLSIS LQPRYLLVNA SWLLGSIGTL LMDLLIFGQF FIYGGANEKE 300
  301 AATRITHDTF EDAAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.85
Transmembrane Helix	10	32	0.85
Cytoplasmic	33	41	0.85
Transmembrane Helix	42	64	0.87
Non-Cytoplasmic	65	70	0.61
Transmembrane Helix	71	92	0.81
Cytoplasmic	93	164	0.99
Transmembrane Helix	165	185	0.96
Non-Cytoplasmic	186	203	0.88
Transmembrane Helix	204	222	0.90
Cytoplasmic	223	236	0.82
Transmembrane Helix	237	259	0.91
Non-Cytoplasmic	260	271	0.77
Transmembrane Helix	272	294	0.89
Cytoplasmic	295	315	0.96