YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985165, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIFGNSTV AAMVGQGQGL NYWQVLANVK TVQPQLNVLE QFWAAWYSYM ENDVLATGLL  60
   61 FFVLHEFMYF ARSLPWFIID QMSWFRKYKI QPTKTPSAKE QWHCLKSVLL SHFLVEAIPI 120
  121 WTFHPLCQKL GISVEVPFPT WKTVATEIAL FFVLEDTWHY WAHRVFHYGV FYKYIHKQHH 180
  181 RYAAPFGLCA EYAHPVETML LGFGTVGMPV LYVLYTGKLH LFTLCLWITL RLFQAVDSHS 240
  241 GYDFPWSLNK FLPFWAGAEH HDLHHHYFIG NYASSFRWWD YTLDTEAGLE AKTTREERMK 300
  301 KRAELRGKKL N

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.58
Transmembrane Helix	54	76	0.53
Cytoplasmic	77	107	0.51
Transmembrane Helix	108	123	0.29
Non-Cytoplasmic	124	207	0.61
Transmembrane Helix	208	222	0.46
Cytoplasmic	223	311	0.52