YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985125, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEEWRLQS ERLPTLFEVL NNQTAAPVDS WSFYTFLFQY PGALNYMDFW VDVMAHLRLC  60
   61 KDYVKGIRES MMLLEVEEQQ GRSRGRPAGS TEKRQSLSSS VLLDALLNDG YLDYHDNRRI 120
  121 SQFLKGDGES ARLSQLFEGR GGDSSGEKAP TEEPHLSLML DEFLVRQMKE SQRPKLTTKQ 180
  181 LVASANTIVD RYLVSKDSMR SERLLTTVPE HMRLEVINLV KGEQRYDPDV FEPLKIISFQ 240
  241 FLEIYCFPKF LSSVALHNLH YDISLSQKAS RSPYSQCTTL ARVATGFFFW AVGFWVGYSL 300
  301 IFLDYPRRVR TVTLVPFLIG SYYIVCGVYH LDIIYAVCGV TQTLISPRRY EEPELGLDQK 360
  361 QNSATKVPFF FTFLGGRKRL TKVRHPFVLN IMRKRALWCL FLVIVTTAVL TVIFTAVPSV 420
  421 RL

Type	Start	End	Confidence
Non-Cytoplasmic	1	279	0.57
Transmembrane Helix	280	302	0.88
Cytoplasmic	303	310	0.47
Transmembrane Helix	311	325	0.56
Non-Cytoplasmic	326	326	0.03
Transmembrane Helix	327	341	0.54
Cytoplasmic	342	395	0.71
Transmembrane Helix	396	417	0.94
Non-Cytoplasmic	418	422	0.73