YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985093
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSGKETRA QFVDESHGLP HGGKSNQNLR SALKQRRPSG EGNSDYGSLV VSSPLLNSTP  60
   61 PTVTKSLVKL YPYLVIADRA LSTLTWTNDD VWESVLMVIC YGAGVVYFER LIKFFGHLVI 120
  121 VGVLWGYSLL DKHVEETIRD RPTLDDVVQM MSRVVAKSDL LLSPVSVLSG NDIKRLLLTM 180
  181 VFLSPIYVIL TLFVIPPRKF VLVAGVYVLT YHSSWSSVTR KLLWRFKLVR LLAFYVTGLD 240
  241 LSGVNKYQGG IFAAVHKKVK KLSGTNGADD GKPIRFTYVL YENQRRWLAI GWTSNMLSYE 300
  301 RSSWTDEFLN EAPPPEKFKL PEENGGMVWR WVDKTWRLDL TNDGAIHLPS SRSKTTASPN 360
  361 SDDGFIYYDN TWKKPSTEDS FSKYTRRRRW IRTAELIKID ALGAAEGAHD ELCSVTTDMG 420
  421 SSPSRNVKFE TSTPSSPRAR KVSFSKVENV RVIHASTSAS DKNNTRGELS ERTKKEPSPE 480
  481 KAGGATESVA KPQAPENDGK TDKKNV

Type	Start	End	Confidence
Cytoplasmic	1	175	0.68
Transmembrane Helix	176	195	0.81
Non-Cytoplasmic	196	506	0.50