YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44986301
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNPIHAKLQ QLCEEFHIDE VTLKLAICLF ISFPFNALLK RLPDQRVRLK CVYIVCVSAF  60
   61 YLFGILNLYD GFKTLLISTL FTYGITRFYR SRFMPYVNFV FVMAHLAMNH IHMQMSTDYD 120
  121 SSKVDITGAQ MVLVMKLTAF AWSYYEGTYA KKEDLSAYQL HRSVTQHPSL LEFMAYAFFY 180
  181 PSLLTGPSFD YADFASWLRC EIFRDLPETK KPKRRWSRDK NQRRQIPKCG SLALGRVLQG 240
  241 IMWIALSFVS PNYVNVRSVL SPEFKARSML YKMHYLYLLG TTFRFKYYAA WIISEASCMV 300
  301 CGLGYNGYDP DTQQIKWDRV QNVDIKAFEF AQNTRECLEA WNMNTNKWLK YYVYLRVTRK 360
  361 GKKPGFRSTL FTFLTSAFWH GTRPGYYLSF ATGALFQTVG KIYRKNFRPM FLAEDGKTPL 420
  421 KSKVIYDFIC SWVTKLAFGY LVQPFVILDL RKSLSCWSSV NFYVHIAIAL TFLVFKGPFA 480
  481 KQAQMFCRRY HPVEIAKKQQ KKAEAVSAEA APTLGDILKD KAQFETNEAE NMAMMLGIPD 540
  541 PSEVELEEAK KDLEEFYKQY DAWKRKNGLE VEEENLRDAF QNFKKEFRKT TRRMSFSDYA 600
  601 ASPSKSK

Type	Start	End	Confidence
Cytoplasmic	1	48	0.55
Transmembrane Helix	49	69	0.86
Non-Cytoplasmic	70	91	0.54
Transmembrane Helix	92	113	0.73
Cytoplasmic	114	231	0.69
Transmembrane Helix	232	250	0.71
Non-Cytoplasmic	251	286	0.65
Transmembrane Helix	287	307	0.59
Cytoplasmic	308	364	0.77
Transmembrane Helix	365	381	0.67
Non-Cytoplasmic	382	385	0.63
Transmembrane Helix	386	403	0.68
Cytoplasmic	404	423	0.73
Transmembrane Helix	424	443	0.68
Non-Cytoplasmic	444	460	0.69
Transmembrane Helix	461	480	0.85
Cytoplasmic	481	607	0.84