YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44986093
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRASALRTV RSLRTPTFGT AFPVGLQRTA IRLNSSASGG GIPKATEELS ELQNQLPTFE  60
   61 TAEPIVQAAG EASNHIGYLA SINMADSWLW PTGLLQNILE HVHVYAGLPW WGTICVTTVL 120
  121 VRALLFPLYV KYSDTIAKTS RVKPELEQLT REVMASTDLV EQQQATLKRR KLLQENGIKN 180
  181 RYLVVPILQL PLAISFFAAI RQMANYPVDG FSVQGIWWFA DLAQADPYLG LQCLTAAMFM 240
  241 GLSRAGGESG AQQFSPQMRK VFTFLPLLTI PATMNLASGV VLYLAVNGVC SVAQTLLLRT 300
  301 PAIRRKLNIA DVVPAPPADP NAPPKGLLES FRENIKKAKE QAEKKAEMNK KRYELEEAAK 360
  361 KEKERTSNIK IVHRSKLK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.81
Transmembrane Helix	13	31	0.38
Non-Cytoplasmic	32	106	0.57
Transmembrane Helix	107	126	0.79
Cytoplasmic	127	179	0.94
Transmembrane Helix	180	200	0.90
Non-Cytoplasmic	201	224	0.86
Transmembrane Helix	225	246	0.79
Cytoplasmic	247	260	0.80
Transmembrane Helix	261	286	0.80
Non-Cytoplasmic	287	378	0.59