YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI13_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.81
Transmembrane Helix	40	61	0.90
Non-Cytoplasmic	62	446	0.80
Transmembrane Helix	447	471	0.85
Cytoplasmic	472	482	0.67
Transmembrane Helix	483	505	0.91
Non-Cytoplasmic	506	513	0.66
Transmembrane Helix	514	535	0.94
Cytoplasmic	536	553	0.72
Transmembrane Helix	554	575	0.87
Non-Cytoplasmic	576	581	0.62
Transmembrane Helix	582	601	0.80
Cytoplasmic	602	643	0.67
Transmembrane Helix	644	665	0.71
Non-Cytoplasmic	666	682	0.48
Transmembrane Helix	683	706	0.84
Cytoplasmic	707	714	0.44
Transmembrane Helix	715	735	0.93
Non-Cytoplasmic	736	755	0.47
Transmembrane Helix	756	777	0.86
Cytoplasmic	778	797	0.44
Transmembrane Helix	798	822	0.78
Non-Cytoplasmic	823	825	0.43
Transmembrane Helix	826	845	0.47
Cytoplasmic	846	853	0.63
Transmembrane Helix	854	877	0.58
Non-Cytoplasmic	878	899	0.79
Transmembrane Helix	900	922	0.88
Cytoplasmic	923	937	0.79
Transmembrane Helix	938	960	0.88
Non-Cytoplasmic	961	976	0.82
Transmembrane Helix	977	1001	0.87
Cytoplasmic	1002	1013	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQIEGAVD EELLKQSVLN NDEDDRRLTK LRIERFRTTH TLYIFLYSAL AALQFIAIAF  60
   61 FTRGFLLSRK VLDDVANRDE STAPAKFDRL VLLVVDALRF DFVIPVDVAA EGYNSHYHNH 120
  121 LRALYERWDE SILLKFLADP PTTTLQRLKG LTTGSLPTFI DAGSNFNGIV IDEGYIIKQM 180
  181 CLINKTIYFA GDDTWDALFH PYLSNVSMPY ESLNVWDLDT VDNGVISFFE DHLLNNPTEK 240
  241 KEWDVLVGHM LGIDHVGHKY GPSHFSMAEK QSQVDGFIRQ IIDAVDEDTL LVVMGDHGMD 300
  301 HTGNHGGDSP AELESTLWLY TKRPGTWRRQ APAAYNTTEL GRYYRAVNQI DLVPSLSLLL 360
  361 GLPIPFNNLG WPIEELAHDD DEWRLFTRQT LMQLETYRNT SNSITDSSKL KILEELKINA 420
  421 NSNSSDAGNY QAILLEMYKD LWARFDYYSI GTGIILLIIS LAMLITITRL IPSIVVGQML 480
  481 SELVPTIIVM PLVSNVCFLG VFYVLRQPAF LQNWLWASLL ATAVGIIIGF YVPIFDRYNL 540
  541 TWLVLRFGEE LSDYWSRVAA FLITLHALIF TSNSFTIWED KIVSFSLTTL GMLTLYEFVF 600
  601 LPKRHSTSAI LAAALGEKEG TVSGISSGQA NSDSLPLGRF ARIVGGYHSI VLIVCTRLAS 660
  661 LITICREEQG AYCTPTFTLT NNYSFSVMLG CLFLVFATPA CIKGYYNVSS SYQAAAPIWI 720
  721 GMLMKSILFV NFIYWELKTF ENTSDTHGLN LTIFNLTISR IVVGVSLVAA NIGWMMGPLC 780
  781 IKLNVHNNDR RSQQATILGY ANAYGAQYFL LVINFFMCIL LFNKPLAQLS LFLMCNQLLS 840
  841 ILEIFDLLKL KENLIGPVAL GLLSYQQFFS TGHQATIPAV QWDMGFILTE RITFPFTHLG 900
  901 IVLNTFGPHI LCGISVALLT LWKQPPGILR ANTLLARVVS NCGMLLIYQT VLCLSTFIWV 960
  961 TNFRRHLMVW KIFCPRFMFA ALSLIVTQLV LTFITIAFAS GRLIKQIDRM FWK