YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985443
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNKLAAVA ALGSLVTAAT SSSGEVPEIV IKGNKFFYSN NGTQFFMRGI AYQTDGHDGS  60
   61 GSNKYVDPLA DFKTCSRDIP YLQQLRTNVI RVYALDGKKD HTESMKALAD AGIYVIADLS 120
  121 EPSLSINRNS PEWSVELYDR YTQVVDELQK YKNVLGFFAG NEVTNEVNNT EASAFVKAAV 180
  181 RDTKAYIKQK GYRKIPVGYA ANDDAKFRDE ITAYFACGSN EERADFYGFN VYSWCGDSSF 240
  241 EKSGYSDRTK EFSRLPVPAF FSEYGCNEVK PRKFTDVAAL YGDQMTDVWS GGIVYMYFQE 300
  301 ANEYGLVTVK GDKVSTLSDF SYYSAQIAKA SPTGVQSASY TPSITSLECP TIADNWKAAS 360
  361 SLPPTPSKDA CKCMMDALSC VVNDSVDKED YGKLFGYLCG SDKKLCNGIA VDASKGEYGA 420
  421 FSYCSGKEKL SYLLNEYYKA NGKSSSACAF SGSASLRKPT EAATCAAVLS SASAGLPAGG 480
  481 NASGSSGAAT STGGSGEPKP SMGTANAKYN MLNVLISSAA TLSVFMGFGL IFI

Type	Start	End	Confidence
Signal Peptide	1	24	0.94
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	510	0.96
Transmembrane Helix	511	532	0.69
Cytoplasmic	533	533	0.36