YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985436
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAATINEEQ VISERDLEKL PVSRNVSRGW AVRKLAILYF LLASFAIGTV HLFQSGYMGA  60
   61 NSKSPQIGRW QLFAENSQGL TKRSRWAMIA EKHHAPLLAA ASLSTAVEPN VCPPDGRRCM 120
  121 GELITRLLLQ SLAIAQDLYG GEWKITQPHP PYNNNKRSLS NYAFETASEL STQIKSRADT 180
  181 LAALNINLVG RFRSNDPNGL AKRGEEDSED TYMIETPHGY HLLSPLTTTA GAMFDEIIEQ 240
  241 TKSQTVGTIE VARVPSPNVS LKKRDPIRFN VEWISYQWGK SYFYGGMTIP DLHGELLSNF 300
  301 EPVNQYLRNA RAWKYCASVH RNIDPSRVTY DSFNIDTGSI YGELYFNTYG PVDKFCLDEK 360
  361 GGAQCPGEAC DGTNN

Type	Start	End	Confidence
Cytoplasmic	1	34	0.93
Transmembrane Helix	35	57	0.86
Non-Cytoplasmic	58	375	0.97