YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985765
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	28	0.66
Non-Cytoplasmic	29	48	0.79
Transmembrane Helix	49	72	0.80
Cytoplasmic	73	79	0.89
Transmembrane Helix	80	104	0.87
Non-Cytoplasmic	105	136	0.87
Transmembrane Helix	137	157	0.92
Cytoplasmic	158	175	0.86
Transmembrane Helix	176	193	0.97
Non-Cytoplasmic	194	200	0.79
Transmembrane Helix	201	221	0.90
Cytoplasmic	222	241	0.87
Transmembrane Helix	242	261	0.84
Non-Cytoplasmic	262	266	0.53
Transmembrane Helix	267	288	0.70
Cytoplasmic	289	346	0.71
Transmembrane Helix	347	367	0.90
Non-Cytoplasmic	368	377	0.62
Transmembrane Helix	378	398	0.84
Cytoplasmic	399	409	0.55
Transmembrane Helix	410	437	0.77
Non-Cytoplasmic	438	451	0.53
Transmembrane Helix	452	470	0.95
Cytoplasmic	471	483	0.54
Transmembrane Helix	484	506	0.88
Non-Cytoplasmic	507	512	0.57
Transmembrane Helix	513	534	0.88
Cytoplasmic	535	691	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMELEQVLAQ MPLLLSYPAM LLSHDLILTP KTSAAGAAKD QQMTQAVPLL LRHLVVPLLT  60
   61 SCVTVSVTQY VLRSFMQKKV LTFLVVFITL ALSSFLGPIQ ASVLSVSLLQ ILLAQHVSLR 120
  121 YYVVFPGLSL AMDYVNGVSY YNTVVSYCVI CVFLLLHRKY RNGAATHFAK YQVPRLFFLV 180
  181 VSLVSLVLTF VWVDYVETVD INYSMFLVFL GCIFVALVTF QDVSREIECN DGSTAKFEVW 240
  241 KVPYAPAVVG VLSLGLQVLS FNIISATFQG NVIMFVFLVL SAVVPHTLEF STTCSHDATQ 300
  301 VDKHCGFAHE HDDNHAQTDS QAHENSRFGV NVTYLLQQLA LDKENRAIFS FLLLNFTFML 360
  361 IQLLYSFRSR SLGLLSDSLH MALDCTSLFL GLLAGVLSKN PATDMFPFSL AYLETLAGFT 420
  421 NGVLLIGIVS SIFVEAAGRI LHPVSLHGTN ELLVVSVLGL LVNLVGLFAF DHSGHGHDNE 480
  481 NLKGIFLHIL ADTLGSVGVI VSTMLTKMFG SQIFDPLASI FIALLILLSS IPLVKSTSAG 540
  541 MLLRLNDKNH NTVKDALTQI MSTPGVTGYT TPRFWPLVMP AAGGHSHAHG HSHSHSHSHS 600
  601 HSHSHSHSHS HSLPSTSDQN DACGGSAKDR KQLIGYIHVQ YLEGENSTII KKRVEKIFEN 660
  661 LGIQAWIQVE PNESNCWCRI PSSVPKSAPL M