YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PFF1_ASHGO
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTKAVFRF RRTNLSTLLV ITYLVITTLY VWDHFRYHFT LPSDYNYAQM LADAWLDLEI  60
   61 ITQYPHPYAS HANDKVHDYL LDRVKEITRD SMFAEISDDY GMGLRTLFRQ EDAISGTKES 120
  121 TVVYYESSNV LARVQGRNSA LDGLLLSAHY DSVPSGYGAT DDGMGVVSML AILTHYVKNQ 180
  181 PERTLVFNFN NNQEFGLAGA SAFFEHPWSK EISYVINLEG TGAGGKAVLF RTSDVSTAQV 240
  241 YAEAVRQQPF GNSMYQQGFY NGHIGTETDF QVYEDQGLRG WDIAFYRPRN LYHTAKDTVL 300
  301 YTSKQALWHM LHTALQLTDY MAINKPDMED TSNAVYFDLF GKWFVVWSAR SLFYWNCIIL 360
  361 ALFPSILAIL FLVAYDMQLL KFNFWDAMLR LPVSVCLAYF CVKLFQVLVG QLNPYVFSRD 420
  421 YVSPILAEAS MFIFMNYVIL SSWERLRPLR DFKTVALVEV SMVLWIYLIS VTRWLRDSDY 480
  481 TATGLYPFTI GYTFVSIGAI IGVFCATFKA KLNPEDDSYV GDSKVDIEQQ QMLMQHQYQQ 540
  541 HSQKHSNQHS PHHSTHHSAQ HSVHHSPRQS IHQVPSSEQR QRDASETPHV IISVDHTAGH 600
  601 QEDSEVTPLL NTGTVAPFPK PVPERVSRKS FLRNVVTSIL NYDWSIQFMV VTPWVTYFTW 660
  661 ICLDLIMGAM NQTIQESAKG TTFVTHMALI GSLLLSLPML PFTYKLHSFA GMLFLLLAVT 720
  721 TAVWTIVAPP FTESSPLKLR FLQTIDLDKN NSSSVYLYGR ERTFMEPILD DIPSVTKYRC 780
  781 VEYAGDGVDI CEYNGMPPRM FNNHHEAESD WTKIMTLEIL KDDRNSTSRT PYQPITAELK 840
  841 INVEENRVCT LNFNSTAFKN WKQGVSPLRE VVILHENPSS NVTPSFYNTA MKNGYYQDEF 900
  901 GNDHYRWNNG ITELQLHKLD FKRGYYKIGL EWIPQLLYRG YDPATSSSEE DDALGVSVTC 960
  961 YWGEYDTDSI TDGFATTNVP AYDELRKYSP KNIIYSSKEK GMVSVTKYVE L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle