YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60467752, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	599	0.59
Transmembrane Helix	600	625	0.80
Non-Cytoplasmic	626	637	0.49
Transmembrane Helix	638	657	0.60
Cytoplasmic	658	666	0.85
Transmembrane Helix	667	689	0.91
Non-Cytoplasmic	690	696	0.69
Transmembrane Helix	697	718	0.90
Cytoplasmic	719	727	0.81
Transmembrane Helix	728	748	0.92
Non-Cytoplasmic	749	755	0.85
Transmembrane Helix	756	776	0.94
Cytoplasmic	777	793	0.86
Transmembrane Helix	794	813	0.94
Non-Cytoplasmic	814	820	0.76
Transmembrane Helix	821	842	0.94
Cytoplasmic	843	862	0.93
Transmembrane Helix	863	884	0.96
Non-Cytoplasmic	885	900	0.83
Transmembrane Helix	901	921	0.92
Cytoplasmic	922	929	0.76
Transmembrane Helix	930	948	0.95
Non-Cytoplasmic	949	956	0.84
Transmembrane Helix	957	979	0.90
Cytoplasmic	980	994	0.72
Transmembrane Helix	995	1014	0.90
Non-Cytoplasmic	1015	1064	0.96
Transmembrane Helix	1065	1087	0.92
Cytoplasmic	1088	1175	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNANNNNYN HNNNKETQSG NNNNNNNNNN NNNNNNKNKN NNNNNIQNEN NFNSPNDGEN  60
   61 INNNMNNSHN NNHNTSDRIS QYSSSEHNIK KEHNRNGSNT SIISASNFNN FMDENSTENN 120
  121 RLSQRPAPAI LNIIQSLIKN PTDDVNGSKR NTLEGIVKKY PSFKSLDGSS ISLSQSQSSM 180
  181 DSSPLTTSNS KSPNHHPQPS PNVLSRSSCA IDSPSLNSTQ LQPNTTTTTT TSSSLNKNNN 240
  241 NKNNNNNNNN NNNNNNNNNN NNNTIDEGGC SNDKSPSSSS YQVNNNNKPK NNISRLELPT 300
  301 SLRSSNNAMD SSAAPSSNTS RPQFSQPQSE VPSSCSPPGN GLLRGAIEEK EESTDNFEKN 360
  361 DNIINDENNN NQSTSVTVNI CENQLENNNN NINSPPQQQS PSTVNDGDGG GCAAGDSFDT 420
  421 TESDHSISGR RMTKMFSDAP IKEYQVTTIE DPLYSLTTTT VNNVSINENT PSSPSITPIK 480
  481 LKQPKPDEDE ELSIKNKKQA SRQTVQLEMG TFDLDGKPNE QIVGSNSSDE TFEGVDVVGI 540
  541 DSDKIVGRDR AFSSAMKESE VVIGEQTVNV DLTQEDMDNI NFQPPNTDPP PPQPLTSKQI 600
  601 LIIFSGLMVS LFLSSLDMTI VATALPAIVA DLHGLEQLPW VVTIYLLTST SVSPLFGKFS 660
  661 DIFGKKILLL SSLIIFLIGS LLCAVATTMN MLILARAIQG IGGGGLMSAV MIVMAEIVPL 720
  721 RDRGKYQGLL GAVYAVSSVV GPLMGGTFTD NITWRWAFWI NLPLGAVAFV VVFFALKIPQ 780
  781 KVIPWREGIK KVDVLGSLSL VAATISFLLA LNWGGIDYPW TSPIIICLFI GTALFVALFI 840
  841 VNEKYWFNVH PIIPLDLFKT RNYVLCSIGS FLLGFVMFGV IYYIPLYFQY VRGATATASG 900
  901 LQLLPTMLGI VLFGAISGLL ITRFGHYKSY PIIGMGFMMI GIYLISLWNH QSTQNEFIGY 960
  961 QCFIGVGIGL TMQILVLIVQ NSVNVIYISI STATVSFFRT IGGVVSVSVF SAILNQQFSQ1020
 1021 NLNGLLEKDA FVLGGMSPHN FNMENIKHIE NPIHQQQIRD AYQSALSIVF LSAAPFAGLG1080
 1081 CILILFVKNQ KLRTTMITQK DKDQEILKKN LEKLQKELHN DDSIDINEEY DENENNENNE1140
 1141 RSDVNINEIE NNNNNTNNDI ELDIQTPPRK STIST